nf-core tools issues - Githubissues

nf-core / tools

Python package with helper tools for the nf-core community.

https://nf-co.re

MIT License

243 stars 191 forks source link

issues

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Pipeline schema build help modal loses text area focus

#3312 swingingsimian opened 10 hours ago
1
Template: Add `manifest.contributors` to `nextflow.config`

#3311 mirpedrol opened 14 hours ago
1
Use params.monochrome_logs in the template and update nf-core components

#3310 mirpedrol closed 14 hours ago
1
Update gitpod/workspace-base Docker digest to 12853f7

#3309 renovate[bot] closed 19 hours ago
0
Update dependency textual-dev to v1.7.0

#3308 renovate[bot] opened 1 day ago
1
Update dependency textual to v0.88.1

#3307 renovate[bot] opened 1 day ago
1
Update dawidd6/action-download-artifact action to v7

#3306 renovate[bot] closed 2 days ago
1
Update pre-commit hook astral-sh/ruff-pre-commit to v0.8.1

#3305 renovate[bot] closed 2 days ago
1
Remove toList() channel operation from inside onComplete block

#3304 robsyme opened 3 days ago
1
Conda install nf-core cli on mac arm64 fails

#3303 swingingsimian opened 4 days ago
0
Improve documentation writing

#3302 LouisLeNezet opened 4 days ago
1
Move modules config import

#3301 LouisLeNezet closed 4 days ago
1
Include config `modules.config` in the wrong place ?

#3300 LouisLeNezet closed 4 days ago
2
Update pre-commit hook astral-sh/ruff-pre-commit to v0.8.0

#3299 renovate[bot] closed 6 days ago
1
Improve subworkflow nf-test migration warning

#3298 edmundmiller opened 1 week ago
1
`nf-core subworkflows lint` nf-test directory is missing rule is inconsistent

#3297 edmundmiller opened 1 week ago
1
Template: Remove `def` from `nextflow.config` and add `trace_report_suffix` param

#3296 mirpedrol closed 6 days ago
1
Cleanup needed for nf-core logo / monochrome logs.

#3295 ewels closed 3 days ago
2
Fix final language server errors in template

#3294 ewels closed 3 days ago
2
Download: Seqera containers Patch 2

#3293 MatthiasZepper closed 11 hours ago
1
build: Setup VS Code tests

#3292 edmundmiller opened 1 week ago
3
Fix usage of cache path and implement parallized testing

#3291 mashehu opened 1 week ago
0
Add `manifest.contributors` to template

#3289 ewels opened 1 week ago
0
Lint pipelines nextflow schema against the meta schema

#3288 mirpedrol opened 1 week ago
0
Documentation shows the old commands without `pipelines` prefix

#3287 mirpedrol opened 1 week ago
0
Values in comments are read when creating template for meta.yml from input options

#3286 zachary-foster opened 2 weeks ago
0
download pipelines fails with some seqera containers

#3285 znorgaard opened 2 weeks ago
4
Update python:3.12-slim Docker digest to 2a6386a

#3284 renovate[bot] closed 2 weeks ago
1
Update codecov/codecov-action action to v5

#3283 renovate[bot] closed 2 weeks ago
1
Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.4

#3282 renovate[bot] closed 2 weeks ago
2
linting fails to execute if "----" present in module patch diff file

#3281 znorgaard opened 2 weeks ago
0
General: Run pre-commit when testing linting the template pipeline

#3280 mirpedrol closed 2 weeks ago
0
General: Add hint to solve git errors with a synced repo

#3279 mirpedrol closed 2 weeks ago
1
Allow skipping linting of specific subworkflows

#3278 mirpedrol opened 2 weeks ago
0
Lint that module nf-tests use a single config with sourcing the args from params

#3277 mahesh-panchal opened 2 weeks ago
0
handle new schema structure in `nf-core pipelines create-params-file`

#3276 mashehu closed 2 weeks ago
1
Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.3

#3275 renovate[bot] closed 3 weeks ago
1
Gitpod miniforge

#3274 mahesh-panchal closed 3 weeks ago
2
Single qutation mark ' in a comment makes AWS release full test break

#3273 jannikseidelQBiC opened 3 weeks ago
2
Template: Add `gpu` profile

#3272 mashehu opened 3 weeks ago
12
template: add `gpu` profile

#3271 mashehu closed 3 weeks ago
3
Phase out the `when` directive

#3270 nictru opened 4 weeks ago
0
Update base to use new previous task

#3269 edmundmiller opened 1 month ago
0
Fix typo

#3268 SPPearce closed 1 month ago
1
Fix logo typo in help message for create logos

#3267 jfy133 closed 1 month ago
2
Running prettier on new pipeline during `pipelines create` fails silently

#3266 awgymer opened 1 month ago
0
3262 Fix pipeline lint bug for pipelines with minimal template features

#3265 awgymer opened 1 month ago
0
CI Runs failing due to (potential) bug in utils method for fetching repo releases

#3264 awgymer opened 1 month ago
0
Un-informative error message from strange linting runs

#3263 fasterius closed 2 weeks ago
1
nf-core pipeline lint gives cryptic prettier error message

#3262 marrip opened 1 month ago
7